Pathology Data Repository
We have developed and deployed an Oracle 7.3 based
laboratory data repository. The data repository maintains data about all
laboratory tests and associates these laboratory test results with both
patients and specimens. This data repository has been used to replace
microfiche in retrieving laboratory data; the data repository is also used
by investigators to carry out clinical studies. All data in the Data
Repository is provided through HL-7 data streams from legacy laboratory
information systems. Some of the key database tables include:
- a table that links patient history numbers with
patient demographics,
- a table to link specimens with patients,
- a table to associate tests and specimens,
- a table to enumerate the test components that are
associated with each test,
- a table that lists the organisms identified in each
microbiology specimen,
- a table to list the antibiotic susceptibility results
for each organism, and
- a free text table providing comments to be associated
with specimens, components and identified organisms.
One of the clients to use the data repository is
designed to provide access to long term data. This client is designed for
the Windows NT platform and is connected to an Oracle database through an
ODBC connection. The system provides access to data through a TCP/IP
socket-based interface. The server accepts requests data from clients
using predefined remote stored procedures that return XML like datastreams.
We plan to replace stored procedure call interface with a vendor supplied
XML interface in the near future.
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